ivy.vis.bokehtree module

Viewer for trees using Bokeh

class ivy.vis.bokehtree.BokehTree(root, scaled=True, nodelabels=True, tiplabels=True, showplot=True, hover=False)

Bases: object

connectors()

This method draws branches between nodes

drawlabels()

This method draws labels for tips and internal nodes

drawtree(showplot=True)

This method sets the output file and creates the figure

highlight(x=None, color=u'red', width=3)

Highlight selected clade(s)

Parameters:x –

A str or list of strs or node or list of nodes. color (str): The color of the highlighted nodes. Optional,

defaults to red

width (int): The width of the highlighted branches. Optional,

defaults to 3.

layout()

This method calculates the coordinates of the nodes

makehovertool()

set_root(root)

This method sets root, leaves, and nleaves. Detects if tree is scaled or not.