ivy.ltt module

Compute lineages through time

ivy.ltt.ltt(node)

Calculate lineages through time. The tree is assumed to be an ultrametric chronogram (extant leaves, with branch lengths proportional to time).

Parameters:node (Node) – A node object. All nodes should have branch lengths. Returns:(times, diversity) - 1D-arrays containing the results. Return type:tuple

ivy.ltt.test()

ivy.ltt.traverse(node, t=0, results=None)

Recursively traverse the tree and collect information about when nodes split and how many lineages are added by its splitting.